Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015913645.1_cds_XP_016463685.1_56786
CDS Infomation

[gene=LOC107786681] [db_xref=GeneID:107786681] [protein=pheophytinase, chloroplastic-like] [protein_id=XP_016463685.1] [location=join(18047..18793,20159..20385,20721..20912,21010..21166,21628..21852)] [gbkey=CDS]
Sequence

ATGGAAATTATATCTTGCCATTCTACATCATTTTATTACGTTGTAAACATTAGAGGGAAA
GCAACGGGTAAATGTCCAGGTTCAAATCAGGCAAGTTTTCCCATATTAAAAGAGGAAAGG
ATGTGTTATGTTCTGTTTAAGCCTTCTCCGGGAGCGCTCAGGTATTCTGGTGCAGATCAG
TTTTGCATAAAGAGACCAAATCGGAGCAGAATTTGTTGCCCTATCAATGCATTCAAGGAA
TTTGAGAATTTTGATTCAAGTGCCTTGGGTAAAAGTTATAACTCTTATGTAGTTGATGGA
AAAGAGGGTAAGCAAAACGTGACTGGTGTTGGCAAATCAGTACCCAAGGTTATCATTCCT
GGTTTGCCAGATGAAGATAATAAAGGTGATTTTGGTGCTCCCATTAGCAGTTGGTTTTGG
GAATGGAAGCCAAAATTGAATGTTCATTATGAGAAATCAGGTTGCGAAAATGTTAATTCC
CCGCCGGTGCTTTTTCTTCCTGGTTTTGGTGTTGGTTCCTTTCACTATGAAAAACAGCTA
AAGGATCTTGGCCGTGATCACAGAATATGGGCAATAGATTTTCTCGGTCAGGGGAAGTCA
TTACCATGTGAAGATCTGACCTCGACGTCCAAGGAACAACTTGACGGAGATGTGTGGGGC
TTTGGAGAAGAAGCAAAACCCTGGGCAAAAGAACTTGTCTACTCTATCGACTTATGGAAG
GAGCAAGTGCACTATTTCATTGAAGAGGTTATTAAAGAGCCAGTTTACATTGTGGGGAAT
TCTCTTGGTGGGTATGTTGCCATTTACTTCGCAGCACGTTATCCTCATTTGGTTAAAGGT
GTAACTTTGCTGAACGCAACACCATTTTGGGGATTTTTTCCGAATCCTGTTAAATCCCCA
AGATTATCTAGCGTATTTCCCTGGACTGGGAGCTTTCCTCTTCCTACCTCTGTCAGAATG
CTCACAGAAGTTGTATGGGAGAAAATTAGCGGTCCTGAATTTATTGCTAAGGTACTGAAA
CAAGTTTATGCTGATAACACCACAAAGTTTGATAAAGTTTTCACTCGGATACTTGAGACG
ACAAAACATCCTGCAGCAGCGGCAGTCTTTGCCTCAATAATGTTTGCTCCTCGAGGGCAA
GTTTCTTTTGAAGAGGCTTTATCTGGGTGTCAAATGAAGAATGTGCCTGTCTGTCTCATG
TATGGGAAAGAAGATCCATGGGTGAAGCCTATTTGGGGTTTACAGGTGAAACGGCAATTG
CCTGAAGCTCCATATTATGAGATTAGCCCTGCCGGTCATTGTCCCCATGATGAAGCTCCG
GAGGTCGTGAATTTTCTGCTCCGCGGATGGGTACGGAGCTTAGAGTCCCATGGATCAGTT
GCATTGCCTCTGCTTGAAACTCCAGAAAATGTTGATTATGATATCGCCAGAGACTTGGAA
TTTTCTCGTGAGGGGCTAAAAAGATCAGTGCTAGTGCAGTTTTATGGGTCAATGATTCCC
CATTGGAAGAGGGTTAGCACGTACCTAAAAACTCAATTTCAAAATTGA

Peptide Sequence

PEP ID

XP_016463685.1
PEP Infomation

PREDICTED: pheophytinase, chloroplastic-like [Nicotiana tabacum]
Sequence

MEIISCHSTSFYYVVNIRGKATGKCPGSNQASFPILKEERMCYVLFKPSPGALRYSGADQ
FCIKRPNRSRICCPINAFKEFENFDSSALGKSYNSYVVDGKEGKQNVTGVGKSVPKVIIP
GLPDEDNKGDFGAPISSWFWEWKPKLNVHYEKSGCENVNSPPVLFLPGFGVGSFHYEKQL
KDLGRDHRIWAIDFLGQGKSLPCEDLTSTSKEQLDGDVWGFGEEAKPWAKELVYSIDLWK
EQVHYFIEEVIKEPVYIVGNSLGGYVAIYFAARYPHLVKGVTLLNATPFWGFFPNPVKSP
RLSSVFPWTGSFPLPTSVRMLTEVVWEKISGPEFIAKVLKQVYADNTTKFDKVFTRILET
TKHPAAAAVFASIMFAPRGQVSFEEALSGCQMKNVPVCLMYGKEDPWVKPIWGLQVKRQL
PEAPYYEISPAGHCPHDEAPEVVNFLLRGWVRSLESHGSVALPLLETPENVDYDIARDLE
FSREGLKRSVLVQFYGSMIPHWKRVSTYLKTQFQN

Transcript Sequence

Gene sequence data has not been registered.